Index

A

absolute() (bob.bio.base.Path method) all_files() (bob.bio.base.database.BioDatabase method) (bob.bio.base.database.FileListBioDatabase method) (bob.bio.base.database.ZTBioDatabase method) all_samples() (bob.bio.base.database.CSVDatabase method) (bob.bio.base.pipelines.Database method) annotate() (bob.bio.base.annotator.FailSafe method) annotation_directory (bob.bio.base.database.BioFile attribute) annotation_extension (bob.bio.base.database.BioFile attribute) annotation_type (bob.bio.base.database.BioFile attribute)

annotations (bob.bio.base.database.BioFile property) annotations() (bob.bio.base.database.BioDatabase method) (bob.bio.base.database.FileListBioDatabase method) AnnotationsLoader (class in bob.bio.base.database) Annotator (class in bob.bio.base.annotator) annotators (bob.bio.base.annotator.FailSafe attribute) argument (in module bob.bio.base) (in module bob.bio.base.utils) arrange_by_client() (bob.bio.base.database.BioDatabase method) AtntBioDatabase (class in bob.bio.base.database)

B

background_model_samples() (bob.bio.base.database.CSVDatabase method) (bob.bio.base.pipelines.Database method) BetaCalibration (class in bob.bio.base.pipelines) BioAlgCheckpointWrapper (class in bob.bio.base.pipelines) BioAlgDaskWrapper (class in bob.bio.base.pipelines) BioAlgorithm (class in bob.bio.base.pipelines) BioDatabase (class in bob.bio.base.database) BioFile (class in bob.bio.base.database) BioFileSet (class in bob.bio.base.database) biometric_algorithm (bob.bio.base.pipelines.PipelineScoreNorm property) bob.bio.base module bob.bio.base.algorithm module bob.bio.base.annotator module bob.bio.base.database module bob.bio.base.extractor module bob.bio.base.pipelines module

bob.bio.base.preprocessor module bob.bio.base.score.load module bob.bio.base.script.commands module bob.bio.base.script.figure module bob.bio.base.script.gen module bob.bio.base.transformers module bob.bio.base.utils module bob.bio.base.utils.annotations module bob.bio.base.utils.io module bob.bio.base.utils.resources module

C

callable (bob.bio.base.annotator.Callable attribute) Callable (class in bob.bio.base.annotator) CategoricalCalibration (class in bob.bio.base.pipelines) category (bob.bio.base.database.AtntBioDatabase attribute) check_file() (in module bob.bio.base) (in module bob.bio.base.utils.io) checkpoint_pipeline_simple() (in module bob.bio.base.pipelines) chmod() (bob.bio.base.Path method) client_id (bob.bio.base.database.BioFile attribute) client_id_from_model_id() (bob.bio.base.database.BioDatabase method) (bob.bio.base.database.FileListBioDatabase method) client_id_from_t_model_id() (bob.bio.base.database.FileListBioDatabase method) (bob.bio.base.database.ZTBioDatabase method) client_ids() (bob.bio.base.database.FileListBioDatabase method) close_compressed() (in module bob.bio.base) (in module bob.bio.base.utils.io) Cmc (class in bob.bio.base.script.figure) cmc() (in module bob.bio.base.score.load) cmc_five_column() (in module bob.bio.base.score.load) cmc_four_column() (in module bob.bio.base.score.load) compare() (BiometricAlgorithm method) (bob.bio.base.algorithm.Distance method) (bob.bio.base.algorithm.GMM method) (bob.bio.base.algorithm.ISV method) (bob.bio.base.algorithm.JFA method) (bob.bio.base.pipelines.BioAlgorithm method)

compute() (bob.bio.base.script.figure.Cmc method) (bob.bio.base.script.figure.Dir method) (bob.bio.base.script.figure.Metrics method) compute_scores() (bob.bio.base.pipelines.PipelineSimple method) copy() (bob.bio.base.transformers.defaultdict method) create_templates() (bob.bio.base.algorithm.Distance method) (bob.bio.base.algorithm.GMM method) (bob.bio.base.algorithm.ISV method) (bob.bio.base.algorithm.JFA method) (bob.bio.base.pipelines.BioAlgorithm method) create_templates_from_samplesets() (bob.bio.base.pipelines.BioAlgCheckpointWrapper method) (bob.bio.base.pipelines.BioAlgDaskWrapper method) (bob.bio.base.pipelines.BioAlgorithm method) CSVDatabase (class in bob.bio.base.database) CSVScoreWriter (class in bob.bio.base.pipelines) custom_enrolled_load_fn() (bob.bio.base.algorithm.GMM method) (bob.bio.base.algorithm.ISV class method) (bob.bio.base.algorithm.JFA class method) custom_enrolled_save_fn() (bob.bio.base.algorithm.GMM class method) (bob.bio.base.algorithm.ISV class method) (bob.bio.base.algorithm.JFA class method) cwd() (bob.bio.base.Path class method)

D

dask_bio_pipeline() (in module bob.bio.base.pipelines) Database (class in bob.bio.base.pipelines) database_directories() (in module bob.bio.base) (in module bob.bio.base.utils.resources) dataset_protocols_checksum (bob.bio.base.database.AtntBioDatabase attribute) dataset_protocols_urls (bob.bio.base.database.AtntBioDatabase attribute)

default_factory (bob.bio.base.transformers.defaultdict attribute) defaultdict (class in bob.bio.base.transformers) Det (class in bob.bio.base.script.figure) Dir (class in bob.bio.base.script.figure) Distance (class in bob.bio.base.algorithm) dump_score() (in module bob.bio.base.score.load)

E

enroll() (bob.bio.base.algorithm.GMM method) enroll_files() (bob.bio.base.database.BioDatabase method) enroll_templates() (bob.bio.base.pipelines.PipelineSimple method) execute_pipeline_score_norm() (in module bob.bio.base.pipelines) execute_pipeline_simple() (in module bob.bio.base.pipelines) execute_pipeline_train() (in module bob.bio.base.pipelines)

exists() (bob.bio.base.Path method) expanduser() (bob.bio.base.Path method) extensions() (in module bob.bio.base) (in module bob.bio.base.utils.resources) Extractor (class in bob.bio.base.extractor) ExtractorTransformer (class in bob.bio.base.transformers)

F

FailSafe (class in bob.bio.base.annotator) file_id (bob.bio.base.database.BioFile attribute) file_names() (bob.bio.base.database.BioDatabase method) FileListBioDatabase (class in bob.bio.base.database) FileSampleLoader (class in bob.bio.base.database) filter_missing_files() (in module bob.bio.base) (in module bob.bio.base.utils.io) filter_none() (in module bob.bio.base) (in module bob.bio.base.utils.io) fit() (bob.bio.base.algorithm.GMM method) (bob.bio.base.pipelines.BetaCalibration method) (bob.bio.base.pipelines.CategoricalCalibration method) (bob.bio.base.pipelines.GammaCalibration method) (bob.bio.base.pipelines.LLRCalibration method) (bob.bio.base.pipelines.TNormScores method) (bob.bio.base.pipelines.WeibullCalibration method) (bob.bio.base.pipelines.ZNormScores method) (bob.bio.base.transformers.ExtractorTransformer method) (bob.bio.base.transformers.PreprocessorTransformer method) (bob.bio.base.transformers.ReferenceIdEncoder method) (Transformer method)

five_column() (in module bob.bio.base.score.load) four_column() (in module bob.bio.base.score.load) FourColumnsScoreWriter (class in bob.bio.base.pipelines) fuse_enroll_scores() (bob.bio.base.pipelines.BioAlgorithm method) fuse_probe_scores() (bob.bio.base.pipelines.BioAlgorithm method)

G

GammaCalibration (class in bob.bio.base.pipelines) gen_score_distr() (in module bob.bio.base.script.gen) get_all_scores() (in module bob.bio.base.score.load) get_base_directory() (bob.bio.base.database.FileListBioDatabase method) get_bio_alg_tags() (in module bob.bio.base.pipelines) get_negatives_positives() (in module bob.bio.base.score.load) get_negatives_positives_all() (in module bob.bio.base.score.load) get_negatives_positives_from_file() (in module bob.bio.base.score.load) get_reader() (bob.bio.base.database.CSVDatabase method)

get_resource_filename() (in module bob.bio.base) (in module bob.bio.base.utils.resources) get_split_dataframe() (in module bob.bio.base.score.load) glob() (bob.bio.base.Path method) GMM (class in bob.bio.base.algorithm) group() (bob.bio.base.Path method) groups() (bob.bio.base.database.BioDatabase method) (bob.bio.base.database.FileListBioDatabase method) (bob.bio.base.pipelines.Database method)

H

hardlink_to() (bob.bio.base.Path method)

Hist (class in bob.bio.base.script.figure) home() (bob.bio.base.Path class method)

I

implements_zt() (bob.bio.base.database.FileListBioDatabase method) init_process() (bob.bio.base.script.figure.Metrics method) is_argument_available() (in module bob.bio.base) (in module bob.bio.base.utils) is_biopipeline_checkpointed() (in module bob.bio.base.pipelines) is_block_device() (bob.bio.base.Path method) is_char_device() (bob.bio.base.Path method) is_dir() (bob.bio.base.Path method)

is_fifo() (bob.bio.base.Path method) is_file() (bob.bio.base.Path method) is_mount() (bob.bio.base.Path method) is_socket() (bob.bio.base.Path method) is_symlink() (bob.bio.base.Path method) iscsv() (in module bob.bio.base.score.load) ISV (class in bob.bio.base.algorithm) iterdir() (bob.bio.base.Path method)

J

JFA (class in bob.bio.base.algorithm)

L

lchmod() (bob.bio.base.Path method) link_to() (bob.bio.base.Path method) list_file() (bob.bio.base.database.CSVDatabase method) list_resources() (in module bob.bio.base) (in module bob.bio.base.utils.resources) LLRCalibration (class in bob.bio.base.pipelines) load() (bob.bio.base.database.BioFile method) (bob.bio.base.extractor.Extractor method) (in module bob.bio.base) (in module bob.bio.base.utils.io)

load_compressed() (in module bob.bio.base) (in module bob.bio.base.utils.io) load_files() (in module bob.bio.base.score.load) load_model() (bob.bio.base.algorithm.GMM method) load_resource() (in module bob.bio.base) (in module bob.bio.base.utils.resources) load_score() (in module bob.bio.base.score.load) lstat() (bob.bio.base.Path method)

M

method (in module bob.bio.base) (in module bob.bio.base.utils) Metrics (class in bob.bio.base.script.figure) mkdir() (bob.bio.base.Path method) model_ids() (bob.bio.base.database.BioDatabase method) model_ids_with_protocol() (bob.bio.base.database.BioDatabase method) (bob.bio.base.database.FileListBioDatabase method) module bob.bio.base bob.bio.base.algorithm bob.bio.base.annotator bob.bio.base.database bob.bio.base.extractor bob.bio.base.pipelines bob.bio.base.preprocessor bob.bio.base.score.load bob.bio.base.script.commands bob.bio.base.script.figure bob.bio.base.script.gen bob.bio.base.transformers bob.bio.base.utils bob.bio.base.utils.annotations bob.bio.base.utils.io bob.bio.base.utils.resources

MultiMetrics (class in bob.bio.base.script.figure)

O

object_sets() (bob.bio.base.database.BioDatabase method) objects() (bob.bio.base.database.AtntBioDatabase method) (bob.bio.base.database.BioDatabase method) (bob.bio.base.database.FileListBioDatabase method) only_required_keys (bob.bio.base.annotator.FailSafe attribute) open() (bob.bio.base.Path method)

open_compressed() (in module bob.bio.base) (in module bob.bio.base.utils.io) open_file() (in module bob.bio.base.score.load) original_directory (bob.bio.base.database.BioFile attribute) original_extension (bob.bio.base.database.BioFile attribute) original_file_name() (bob.bio.base.database.FileListBioDatabase method) owner() (bob.bio.base.Path method)

P

path (bob.bio.base.database.BioFile attribute) Path (class in bob.bio.base) PipelineScoreNorm (class in bob.bio.base.pipelines) PipelineSimple (class in bob.bio.base.pipelines) post_process() (bob.bio.base.pipelines.CSVScoreWriter method) (bob.bio.base.pipelines.PipelineScoreNorm method) (bob.bio.base.pipelines.PipelineSimple method) (bob.bio.base.pipelines.ScoreWriter method) post_process_template (bob.bio.base.pipelines.TNormScores attribute) (bob.bio.base.pipelines.ZNormScores attribute) predict_proba() (bob.bio.base.pipelines.BetaCalibration method) (bob.bio.base.pipelines.GammaCalibration method) (bob.bio.base.pipelines.LLRCalibration method) (bob.bio.base.pipelines.WeibullCalibration method)

Preprocessor (class in bob.bio.base.preprocessor) PreprocessorTransformer (class in bob.bio.base.transformers) pretty_print() (in module bob.bio.base) (in module bob.bio.base.utils) probe_file_sets() (bob.bio.base.database.BioDatabase method) probe_files() (bob.bio.base.database.BioDatabase method) probe_templates() (bob.bio.base.pipelines.PipelineSimple method) probes() (bob.bio.base.database.CSVDatabase method) (bob.bio.base.pipelines.Database method) project() (bob.bio.base.algorithm.GMM method) protocols() (bob.bio.base.pipelines.Database method)

R

rank_option() (in module bob.bio.base.script.commands) read_annotation_file() (in module bob.bio.base.utils.annotations) read_biometric_reference() (bob.bio.base.algorithm.GMM method) read_bytes() (bob.bio.base.Path method) read_config_file() (in module bob.bio.base) (in module bob.bio.base.utils.resources) read_data() (bob.bio.base.preprocessor.Preprocessor method) read_feature() (bob.bio.base.extractor.Extractor method) read_original_data() (in module bob.bio.base) (in module bob.bio.base.utils.io) read_text() (bob.bio.base.Path method) readlink() (bob.bio.base.Path method)

ReferenceIdEncoder (class in bob.bio.base.transformers) references() (bob.bio.base.database.CSVDatabase method) (bob.bio.base.pipelines.Database method) rename() (bob.bio.base.Path method) replace() (bob.bio.base.Path method) replace_directories() (bob.bio.base.database.BioDatabase method) required_keys (bob.bio.base.annotator.FailSafe attribute) resolve() (bob.bio.base.Path method) resource_keys() (in module bob.bio.base) (in module bob.bio.base.utils.resources) rglob() (bob.bio.base.Path method) rmdir() (bob.bio.base.Path method) Roc (class in bob.bio.base.script.figure)

S

samefile() (bob.bio.base.Path method) samples() (bob.bio.base.database.CSVDatabase method) save() (in module bob.bio.base) (in module bob.bio.base.utils.io) save_compressed() (in module bob.bio.base) (in module bob.bio.base.utils.io) save_model() (bob.bio.base.algorithm.GMM method) score_fusion_strategy() (in module bob.bio.base) (in module bob.bio.base.utils) score_sample_templates() (bob.bio.base.pipelines.BioAlgDaskWrapper method) (bob.bio.base.pipelines.BioAlgorithm method) score_writer (bob.bio.base.pipelines.PipelineScoreNorm property) scores() (in module bob.bio.base.score.load) ScoreWriter (class in bob.bio.base.pipelines) selected_elements() (in module bob.bio.base) (in module bob.bio.base.utils) selected_indices() (in module bob.bio.base) (in module bob.bio.base.utils) set_base_directory() (bob.bio.base.database.FileListBioDatabase method) set_fit_request() (bob.bio.base.pipelines.CategoricalCalibration method) (bob.bio.base.pipelines.TNormScores method) (bob.bio.base.pipelines.ZNormScores method)

set_score_references_path() (bob.bio.base.pipelines.BioAlgCheckpointWrapper method) set_score_request() (bob.bio.base.algorithm.ISV method) (bob.bio.base.algorithm.JFA method) set_transform_request() (bob.bio.base.annotator.Annotator method) (bob.bio.base.annotator.Callable method) (bob.bio.base.annotator.FailSafe method) (bob.bio.base.database.FileSampleLoader method) (bob.bio.base.pipelines.CategoricalCalibration method) (bob.bio.base.transformers.ExtractorTransformer method) (bob.bio.base.transformers.PreprocessorTransformer method) split() (in module bob.bio.base.score.load) split_csv_scores() (in module bob.bio.base.score.load) split_csv_vuln() (in module bob.bio.base.score.load) split_five_column() (in module bob.bio.base.score.load) split_four_column() (in module bob.bio.base.score.load) split_X_by_y() (in module bob.bio.base.transformers) stat() (bob.bio.base.Path method) symlink_to() (bob.bio.base.Path method)

T

t_enroll_files() (bob.bio.base.database.ZTBioDatabase method) t_model_ids() (bob.bio.base.database.ZTBioDatabase method) t_stats (bob.bio.base.pipelines.TNormScores attribute) tclient_ids() (bob.bio.base.database.FileListBioDatabase method) template_ids() (bob.bio.base.pipelines.Database method) test_files() (bob.bio.base.database.BioDatabase method) tmodel_ids_with_protocol() (bob.bio.base.database.FileListBioDatabase method) (bob.bio.base.database.ZTBioDatabase method) TNormScores (class in bob.bio.base.pipelines) tobjects() (bob.bio.base.database.FileListBioDatabase method) (bob.bio.base.database.ZTBioDatabase method) touch() (bob.bio.base.Path method) train() (bob.bio.base.extractor.Extractor method) train_background_model() (bob.bio.base.pipelines.PipelineSimple method) training_files() (bob.bio.base.database.BioDatabase method) transform() (bob.bio.base.algorithm.GMM method) (bob.bio.base.algorithm.ISV method) (bob.bio.base.algorithm.JFA method) (bob.bio.base.annotator.Annotator method) (bob.bio.base.annotator.Callable method) (bob.bio.base.annotator.FailSafe method) (bob.bio.base.database.AnnotationsLoader method) (bob.bio.base.database.FileSampleLoader method) (bob.bio.base.pipelines.CategoricalCalibration method) (bob.bio.base.pipelines.TNormScores method) (bob.bio.base.pipelines.ZNormScores method) (bob.bio.base.transformers.ExtractorTransformer method) (bob.bio.base.transformers.PreprocessorTransformer method) (bob.bio.base.transformers.ReferenceIdEncoder method) (Transformer method)

transformer (bob.bio.base.pipelines.PipelineScoreNorm property) treferences() (bob.bio.base.database.CSVDatabase method)

U

unlink() (bob.bio.base.Path method)

uses_dense_probe_file() (bob.bio.base.database.FileListBioDatabase method) uses_probe_file_sets() (bob.bio.base.database.BioDatabase method)

V

valid_keywords (in module bob.bio.base.utils.resources)

W

WeibullCalibration (class in bob.bio.base.pipelines) write() (bob.bio.base.pipelines.CSVScoreWriter method) (bob.bio.base.pipelines.FourColumnsScoreWriter method) (bob.bio.base.pipelines.ScoreWriter method) write_biometric_reference() (bob.bio.base.algorithm.GMM method) (bob.bio.base.pipelines.BioAlgCheckpointWrapper method)

write_bytes() (bob.bio.base.Path method) write_data() (bob.bio.base.preprocessor.Preprocessor method) write_feature() (bob.bio.base.extractor.Extractor method) write_scores() (bob.bio.base.pipelines.PipelineScoreNorm method) (bob.bio.base.pipelines.PipelineSimple method) write_scores_to_file() (in module bob.bio.base.script.gen) write_text() (bob.bio.base.Path method)

Z

z_probe_file_sets() (bob.bio.base.database.ZTBioDatabase method) z_probe_files() (bob.bio.base.database.ZTBioDatabase method) zclient_ids() (bob.bio.base.database.FileListBioDatabase method) ZNormScores (class in bob.bio.base.pipelines)

zobjects() (bob.bio.base.database.FileListBioDatabase method) (bob.bio.base.database.ZTBioDatabase method) zprobes() (bob.bio.base.database.CSVDatabase method) ZTBioDatabase (class in bob.bio.base.database)